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eRAM

encyclopedia of Rare Disease Annotation for Precision Medicine



   left ventricular noncompaction
  

Disease ID 1051
Disease left ventricular noncompaction
Definition
Left ventricular noncompaction (LVNC) is defined by 3 markers: prominent left ventricular (LV) trabeculae, deep intertrabecular recesses, and the thin compacted layer. [PMID:16670098, PMID:25443708]
Synonym
left ventricular noncompaction (disorder)
Orphanet
DOID
UMLS
C1960469
Comorbidity
UMLS | Disease | Sentences' Count(Total Sentences:26)
C0878544  |  cardiomyopathy  |  4
C0026266  |  mitral regurgitation  |  3
C0018801  |  heart failure  |  2
C0264832  |  peripartum cardiomyopathy  |  2
C0007194  |  hypertrophic cardiomyopathy  |  2
C0003507  |  aortic stenosis  |  1
C0026267  |  mitral valve prolapse  |  1
C0002726  |  amyloidosis  |  1
C0027868  |  neuromuscular disorders  |  1
C0022679  |  cystic kidney  |  1
C0027051  |  myocardial infarct  |  1
C0013264  |  duchenne muscular dystrophy  |  1
C2699199  |  1p36 deletion syndrome  |  1
C0018802  |  congestive heart failure  |  1
C0026850  |  muscular dystrophy  |  1
C0152096  |  trisomy 18  |  1
C0022658  |  kidney disease  |  1
C0175695  |  sotos syndrome  |  1
C0087086  |  thrombi  |  1
C0027051  |  myocardial infarction  |  1
C0026848  |  muscular disorders  |  1
C0023976  |  long qt syndrome  |  1
C0020542  |  pulmonary hypertension  |  1
C0917713  |  becker muscular dystrophy  |  1
C0020538  |  hypertension  |  1
C0002986  |  fabry disease  |  1
Curated Gene
Entrez_id | Symbol | Resource(Total Genes:12)
4625  |  MYH7  |  ORPHANET
11155  |  LDB3  |  ORPHANET;UNIPROT
6901  |  TAZ  |  ORPHANET;UNIPROT
7139  |  TNNT2  |  ORPHANET
4000  |  LMNA  |  ORPHANET
7168  |  TPM1  |  ORPHANET
57644  |  MYH7B  |  ORPHANET
4607  |  MYBPC3  |  ORPHANET
1837  |  DTNA  |  ORPHANET;UNIPROT
57534  |  MIB1  |  ORPHANET
63976  |  PRDM16  |  ORPHANET
70  |  ACTC1  |  ORPHANET
Inferring Gene(Waiting for update.)
Text Mined Gene
Entrez_id | Symbol | Score | Resource(Total Genes:74)
88  |  ACTN2  |  3.98  |  DISEASES
270  |  AMPD1  |  3.506  |  DISEASES
287  |  ANK2  |  2.083  |  DISEASES
10564  |  ARFGEF2  |  2.781  |  DISEASES
415  |  ARSE  |  1.531  |  DISEASES
9531  |  BAG3  |  1.611  |  DISEASES
755  |  C21orf2  |  2.311  |  DISEASES
781  |  CACNA2D1  |  2.673  |  DISEASES
1187  |  CLCNKA  |  2.642  |  DISEASES
7555  |  CNBP  |  1.141  |  DISEASES
78987  |  CRELD1  |  1.409  |  DISEASES
1760  |  DMPK  |  2.132  |  DISEASES
1832  |  DSP  |  2.195  |  DISEASES
1837  |  DTNA  |  4.841  |  DISEASES
1855  |  DVL1  |  1.699  |  DISEASES
1889  |  ECE1  |  1.492  |  DISEASES
2280  |  FKBP1A  |  3.372  |  DISEASES
2281  |  FKBP1B  |  1.993  |  DISEASES
642489  |  FKBP1C  |  2.976  |  DISEASES
3032  |  HADHB  |  2.101  |  DISEASES
3155  |  HMGCL  |  2.228  |  DISEASES
3679  |  ITGA7  |  2.525  |  DISEASES
3714  |  JAG2  |  1.565  |  DISEASES
3920  |  LAMP2  |  1.205  |  DISEASES
11155  |  LDB3  |  4.854  |  DISEASES
4000  |  LMNA  |  2.919  |  DISEASES
4010  |  LMX1B  |  2.6  |  DISEASES
10747  |  MASP2  |  1.962  |  DISEASES
142678  |  MIB2  |  2.975  |  DISEASES
4285  |  MIPEP  |  3.026  |  DISEASES
25974  |  MMACHC  |  1.98  |  DISEASES
4509  |  MT-ATP8  |  2.235  |  DISEASES
4514  |  MT-CO3  |  1.393  |  DISEASES
4519  |  MT-CYB  |  2.648  |  DISEASES
4535  |  MT-ND1  |  1.79  |  DISEASES
4538  |  MT-ND4  |  1.754  |  DISEASES
4607  |  MYBPC3  |  5.123  |  DISEASES
4624  |  MYH6  |  2.983  |  DISEASES
4625  |  MYH7  |  5.757  |  DISEASES
89796  |  NAV1  |  2.604  |  DISEASES
4703  |  NEB  |  2.842  |  DISEASES
10529  |  NEBL  |  2.83  |  DISEASES
91624  |  NEXN  |  2.414  |  DISEASES
378884  |  NHLRC1  |  1.64  |  DISEASES
1482  |  NKX2-5  |  2.616  |  DISEASES
190  |  NR0B1  |  1.083  |  DISEASES
64324  |  NSD1  |  1.565  |  DISEASES
84033  |  OBSCN  |  4.201  |  DISEASES
5339  |  PLEC  |  2.985  |  DISEASES
23207  |  PLEKHM2  |  4.666  |  DISEASES
93166  |  PRDM6  |  3.543  |  DISEASES
5590  |  PRKCZ  |  1.834  |  DISEASES
64783  |  RBM15  |  2.081  |  DISEASES
282996  |  RBM20  |  2.798  |  DISEASES
473  |  RERE  |  2.517  |  DISEASES
6018  |  RLF  |  4.702  |  DISEASES
6262  |  RYR2  |  3.369  |  DISEASES
6331  |  SCN5A  |  2.863  |  DISEASES
644096  |  SDHAF1  |  3.003  |  DISEASES
6391  |  SDHC  |  1.052  |  DISEASES
6392  |  SDHD  |  1.899  |  DISEASES
25970  |  SH2B1  |  1.867  |  DISEASES
6546  |  SLC8A1  |  1.892  |  DISEASES
8243  |  SMC1A  |  2.007  |  DISEASES
55553  |  SOX6  |  2.036  |  DISEASES
23013  |  SPEN  |  1.455  |  DISEASES
27286  |  SRPX2  |  1.658  |  DISEASES
57057  |  TBX20  |  2.416  |  DISEASES
7137  |  TNNI3  |  2.497  |  DISEASES
7139  |  TNNT2  |  3.763  |  DISEASES
7273  |  TTN  |  3.604  |  DISEASES
10277  |  UBE4B  |  2.658  |  DISEASES
7402  |  UTRN  |  1.278  |  DISEASES
10163  |  WASF2  |  1.273  |  DISEASES
Locus
Symbol | Locus(Total Locus:12)
LMNA  |  1q22
MYBPC3  |  11p11.2
MIB1  |  18q11.2
LDB3  |  10q23.2
PRDM16  |  1p36.32
ACTC1  |  15q14
TAZ  |  Xq28
MYH7B  |  20q11.22
TNNT2  |  1q32.1
DTNA  |  18q12.1
TPM1  |  15q22.2
MYH7  |  14q11.2
Disease ID 1051
Disease left ventricular noncompaction
Integrated Phenotype(Waiting for update.)
Text Mined Phenotype
HPO | Name | Sentences' Count(Total Phenotypes:26)
Disease ID 1051
Disease left ventricular noncompaction
Manually Symptom
UMLS  | Name(Total Manually Symptoms:4)
C0878544  |  cardiomyopathy
C0232197  |  fibrillation
C0026266  |  mitral regurgitation
C0003504  |  aortic regurgitation
Text Mined Symptom
UMLS | Name | Sentences' Count(Total Symptoms:3)
C0878544  |  cardiomyopathy  |  4
C0026266  |  mitral regurgitation  |  3
C0232197  |  fibrillation  |  1
Manually Genotype(Total Text Mining Genotypes:0)
(Waiting for update.)
Text Mining Genotype(Total Genotypes:0)
(Waiting for update.)
All Snps(Total Genotypes:3)
snpId pubmedId geneId geneSymbol diseaseId sourceId sentence score Year geneSymbol_dbSNP CHROMOSOME POS REF ALT
rs104894941178467866901TAZumls:C1960469BeFreeThe diagnosis was established by the presence of left ventricular noncompaction and molecular analysis (c.C153G or Y51X mutation of the TAZ gene).0.1216286512008DNASE1L1;TAZX154412129CG
rs1219083382292916511155LDB3umls:C1960469BeFreeWe have previously identified a p.D117N mutation in the LIM domain-binding protein 3-encoding Z-band alternatively spliced PDZ motif gene (ZASP) in a patient with left ventricular noncompaction and conduction disturbances.0.1208143262012LDB31086687073GA,C
rs37403431642734611155LDB3umls:C1960469BeFreeA 163G>A polymorphism was identified in LDB3, which changed a valine to isoleucine (V55I) in one patient with isolated LVNC.0.1208143262006LDB31086679436GA
GWASdb Annotation(Total Genotypes:0)
(Waiting for update.)
GWASdb Snp Trait(Total Genotypes:0)
(Waiting for update.)
Mapped by lexical matching(Total Items:0)
(Waiting for update.)
Mapped by homologous gene(Total Items:0)
(Waiting for update.)
Disease ID 1051
Disease left ventricular noncompaction
Case(Waiting for update.)